SeisComP3

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scautoloc

Locates seismic events.

Description

scautoloc is the SeisComP3 program responsible for automatically locating seismic events in near-real time. It normally runs as a daemon continuously reading picks and amplitudes and processing them in real time. An offline mode is available as well. scautoloc reads automatic picks and several associated amplitudes. On that basis it tries to identify combinations of picks that correspond to a common seismic event. If the produced location meets certain consistency criteria, it is reported, i.e. passed on to other programs that take the origins as input.

Location procedure

The procedure of scautoloc to identify and locate seismic events basically consists of the following steps:

Pick preparation

In scautoloc each incoming pick needs to be accompanied by a specific set of amplitudes. Since in the SeisComP3 data model amplitudes and picks are independent objects, the amplitudes are added as attributes to their corresponding picks upon reception by scautoloc.

Pick filtering

Each incoming pick is filtered, i.e. it is checked if a pick is outdated and if the complete set of associated amplitudes is present already. If a station produces picks extremely often, these are considered to be more likely glitches and result in an increased SNR threshold.

Association

It is first attempted to associate an incoming pick with the known origins. Especially for large events with stable locations based on many picks already associated, this is the preferred way to handle the pick. If the association succeeds, the nucleation process can be bypassed. Under certain circumstances picks are both associated and fed into the nucleator.

Nucleation

If direct association fails, scautoloc tries to make a new origin out of this and other unassociated, previously received picks. This process is called "nucleation". scautoloc performs a grid search over space and time, which is a rather expensive procedure as it requires lots of resources both in terms of CPU and RAM. Additional nucleation algorithms will become available in future. The grid is a discrete set of -in principle- arbitrary points that sample the area of interest sufficiently densely. In the grid search, each of the grid points is taken as a hypothetical hypocenter for all incoming picks. Each incoming pick is back projected in time for each of the grid points, on the assumption that it is a first-arrival "P" onset. If the pick indeed corresponds to a "P" arrival of a seismic event, and if this event was recorded at a sufficient number of stations, the back projected new pick will cluster with previous picks from the same event. The cluster will be densest around the origin time at the grid point closest to the hypocenter. In principle, the grid could be so dense that the location obtained from the grid search can be used directly. However, as RAM memory as well as CPU speed is limited, this is not possible. Therefore, if a cluster is identified as a potential origin, it does not necessarily mean that all contributing picks actually correspond to "P" arrivals. It may as well be a coincidental match caused by the coarseness of the grid or possible contamination by picked noise. Therefore, a location program (LocSAT) is run in order to try a location and test if the set of picks indeed forms a consistent hypocenter. If the pick residual RMS is too large, an improvement is attempted by excluding each of the contributing picks once to test if a reduction in RMS can be achieved. If the new origin meets all requirements, it is accepted as new seismic event location.[[br]]The grid points are specified in a text file "grid.txt". The default file shipped with scautoloc defines a grid with globally even distributed points at the surface, and depth points confined to regions of known deep seismicity. It may be modified, but should not comprise too many grid points (>3000, depending on CPU speed and RAM). See below for more details about the grid file.

Origin refinement

An origin produced or updated through association and/or nucleation may still be contaminated by phases wrongly interpreted as "P" arrivals. scautoloc tries to improve these origins based on e.g. pick SNR and amplitude. In this processing step, it is also attempted to associate phases which slipped through during the first association attempt, e.g. because the initial location was incorrect. If the origin contains a sufficient number of arrivals to assume a reasonably well location result, scautoloc additionally tries to associate picks as secondary phases such as "pP". Such secondary phases are only "weakly associated", i.e. these phases are not used for the location. For the analyst, however, it is useful to have possible “pP” phases predefined.

Origin filtering

This process involves final consistency checks of new/updated origins etc. During this procedure, the origins are not modified any more.

In the course of nucleation and association, as well as in the origin refinement and filtering, certain heuristic criteria are applied to compare the "qualities" of concurring origins. These criteria are combined in an internal origin score, which is based on properties of the picks themselves in the context of the respective origin (residuals, RMS, azimuthal gaps). In addition, the amplitudes provide valuable means of comparing origin qualities. Obviously, a pick with a high SNR will less likely be a transient burst of noise than a pick merely exceeding the SNR threshold. A high-SNR pick thus increases the origin score. Similarly, a pick associated to a large absolute amplitude is more likely to correspond to a real seismic onset, especially in case of simultaneous, large-amplitude observations at neighboring stations. A special case arises, when several nearby stations report amplitudes above a certain “XXL threshold”. For details see the section "Preliminary origins". The amplitudes used by scautoloc are of type "snr" and "mb", corresponding to the (relative, unit-less) SNR amplitude and the (absolute) "mb" amplitude, respectively. These two amplitudes are provided by [#scautopick scautopick]. In case of a setup in which scautopick is replaced by a different automatic picker, these two amplitudes must nevertheless be provided to scautoloc. Otherwise, the picks are not used. At the moment this is a strict requirement, in the future it may be changed.

Grid file

The grid configuration file consists of one line per grid point, each grid point specified by 6 columns:

-10.00 105.00 20.0 5.0 180.0 8

The columns are grid point coordinates (latitude, longitude, depth), diameter, maximum station distance and minimum pick count, respectively. The above line sets a grid point centered at 10° S / 105° E at the depth of 20 km. It is sensitive to events within 5° of the center. Stations in a distance of up to 180° may be used to nucleate an event. At least 8 picks have to contribute to an origin at this location. The diameter should be chosen large enough to allow grid cells to overlap, but not too large. The size also determines the time windows for grouping the picks in the grid search. If the time windows are too long the risk of contamination with wrong picks increases. The maximum station distance allows to restrict to certain stations for the according grid points. E.g. stations from Australia are normally not required to create an event in Europe. If there is doubt, set the value to 180. The minimum pick count specifies how many picks are required for a given grid point to allow the creation of a new origin. The default grid file contains a global grid with even spacing of ~5° with additional points at greater depths where deep-focus events are known to occur.

Station configuration file

The station configuration file contains lines consisting of network code, station code, usage flag (0 or 1) and maximum nucleation distance. A usage flag of 1 indicates the station shall be used by scautoloc. If it shall not be used, 0 must be specified here. The maximum nucleation distance is the distance (in degrees) from the station up to which this station may contribute to a new origin. If this distance is 180°, this station may contribute to new origins world-wide. However, if the distance is only 10°, the range of this station is limited. This is a helpful setting in case of mediocre stations in a region where there are numerous good and reliable stations nearby. The station will then not pose a risk for locations generated outside the maximum nucleation distance. Network and station code may be wildcards (*) for convenience

* * 1 90
GE * 1 180
GE HLG 1 10
TE RGN 0 10

The example above means that all stations from all networks by default can create new events within 90°. The GE stations can create events at any distance, except for the rather noisy station HLG in the network GE, which is restricted to 10°. By setting the 3rd column to 0, TE RGN is ignored by scautoloc.

Preliminary origins

Usually, scautoloc will not report origins with less than a certain number of defining phases (specified by autoloc.minPhaseCount), typically 6-8 phases. In the case of events that result in very large amplitudes at a sufficient number of stations (hereafter called “XXL events”), it is possible to produce preliminary origins based on less picks.[[br]]Prerequisite is that all these picks have extraordinary large amplitudes and SNR and lie within a relatively small region. Such picks are hereafter called “XXL picks”. A pick is internally tagged as “XXL pick” if its amplitude exceeds a certain threshold (specified by autoloc.thresholdXXL) and has a SNR > 8. For larger SNR picks with smaller amplitude can reach the XXL tag, because it is justified to treat a large-SNR pick as XXL pick even if its amplitude is somewhat below the XXL amplitude threshold. The XXL criterion should be judged as workaround to identify picks which justify the nucleation of preliminary origins.

Logging

scautoloc produces two kinds of log files: a normal application log file containing the processing and location history and an optional pick log. The pick log contains all received picks with associated amplitudes in a simple text file, one entry per line. This pick log should always be active as it allows pick playback for trouble shooting and optimization of scautoloc. If something did not work as expected, playing back the pick log will provide a useful way to find the source of the problem without the need of processing the raw waveforms again. The application log file contains miscellaneous information in variable format. The format of the entries may change anytime, so no downstream application should ever depend on it. There are some special lines, however. These contain certain keywords that allow convenient filtering of the most important information using grep. These keywords are NEW, UPD and OUT, for a new, updated and output origin, respectively. They can be used like:

grep '\(NEW\---UPD\---OUT\)' ~/.seiscomp3/log/scautoloc.log

This will extract all lines containing the above keywords, providing a very simple (and primitive) origin history.

Publication interval

In principle, scautoloc produces a new solution (origin) after each processed pick. This is desirable at an early stage of an event, when every additional information may lead to significant improvements. A consolidated solution, consisting of many (dozens) of picks, on the other hand may not always benefit greatly from additional picks that usually originate from large distances. Updates after each pick are therefore unnecessary. It is possible to control the time interval between subsequent origins reported by scautoloc. The time interval is a linear function of the number of picks:

Δt = aN + b

Setting a = b = 0, then Δt is always zero, meaning there is never a delay in sending new solutions. This is not desirable. Setting a = 0.5, each pick will increase the time interval until the next solution will be sent by 0.5s. This means that scautoloc will wait 10 seconds after an origin with 20 picks is sent.

Housekeeping

scautoloc keeps objects in memory only for a certain amount of time. This time span is specified in seconds in autoloc.maxAge. The default value is 21600 seconds (6 hours). After this time, unassociated picks expire. Newly arriving picks older than that (e.g. in the case of high data latencies) are ignored. Origins will live slightly longer, including the picks associated to them. In a setup where many stations have considerable latencies, e.g. dialup stations, the expiration time should be chosen long enough to accommodate late picks. On the other hand, the memory usage for large networks may be a concern as well. scautoloc periodically cleans up its memory from expired objects. The time interval between subsequent housekeepings is specified in autoloc.cleanupInterval in seconds.

Test mode

In the test mode, scautoloc connects to a messaging server as usual and receives picks and amplitudes from there, but no results are sent back to the server. Log files are written as usual. This mode can be used to test new parameter settings before implementation in the real-time system. It also provides a simple way to log picks from a real-time system to file.

Offline mode

scautoloc normally runs as a daemon in the background, continuously reading picks and amplitudes and processing them in real time. However, scautoloc may also be operated in offline mode. This is useful for debugging. Offline mode is activated by setting autoloc.offline to true or by adding the parameter --offline to the command line. When operated in offline mode, scautoloc will connect neither to the messaging nor to the database. Instead, it reads picks in the pick file format from standard input. Example for entries in a pick file:

2008-09-25 00:20:16.6 SK LIKS EH __ 4.6 196.953 1.1 A [id]
2008-09-25 00:20:33.5 SJ BEO BH __ 3.0 479.042 0.9 A [id]
2008-09-25 00:21:00.1 CX MNMCX BH __ 21.0 407.358 0.7 A [id]
2008-09-25 00:21:02.7 CX HMBCX BH __ 14.7 495.533 0.5 A [id]
2008-09-24 20:53:59.9 IA KLI BH __ 3.2 143.752 0.6 A [id]
2008-09-25 00:21:04.5 CX PSGCX BH __ 7.1 258.407 0.6 A [id]
2008-09-25 00:21:09.5 CX PB01 BH __ 10.1 139.058 0.6 A [id]
2008-09-25 00:21:24.0 NU ACON SH __ 4.9 152.910 0.6 A [id]
2008-09-25 00:22:09.0 CX PB04 BH __ 9.0 305.960 0.6 A [id]
2008-09-25 00:19:13.1 GE BKNI BH __ 3.3 100.523 0.5 A [id]
2008-09-25 00:23:47.6 RO IAS BH __ 3.1 206.656 0.3 A [id]
2008-09-25 00:09:12.8 GE JAGI BH __ 31.9 1015.304 0.8 A [id]
2008-09-25 00:25:10.7 SJ BEO BH __ 3.4 546.364 1.1 A [id]

where [id] is a placeholder for the real pick id which has been omitted in this example.

Note

In the above example some of the picks are not in right order of time because of data latencies. In offline mode scautoloc will not connect to the database, in consequence the station coordinates cannot be read from the database and thus have to be supplied via a file. The station coordinates file has a simple format with one line per entry, consisting of 5 columns: network code, station code, latitude, longitude, elevation (in meters), e.g.,

GE APE 37.0689 25.5306 620.0
GE BANI -4.5330 129.9000 0.0
GE BKB -1.2558 116.9155 0.0
GE BKNI 0.3500 101.0333 0.0
GE BOAB 12.4493 -85.6659 381.0
GE CART 37.5868 -1.0012 65.0
GE CEU 35.8987 -5.3731 320.0
GE CISI -7.5557 107.8153 0.0

The location of this file is specified in autoloc.stationLocations or on the command line using --station-locations

How to make Autopick and Autoloc work together

The two main programs in the automatic event detection and location processing chain, scautopick and scautoloc, only work together if the information needed by scautoloc can be supplied by scautopick. This document explains current implicit dependencies between these two utilities and is meant as a guide especially for those who plan to modify or replace one or both of these utilities by own developments.

Both scautopick and scautoloc are subject to ongoing developments. The explanation given below can therefore only be considered a hint, but not a standard.

Picks

The data scautoloc works with are primarily seismic phase picks. In addition, certain amplitudes are used as a kind of quality criterion for the pick, allowing picks with a higher absolute amplitude or signal-to-noise ratio to be given priority in the processing over weak low-quality picks.

Currently scautoloc only processes automatic, 1st-arrival P picks. Furthermore, in the current version of scautopick only P picks are produced anyway. It can therefore be safely assumed by scautoloc that any automatic pick is a P pick that either has a phaseHint attribute explicitly stating "P" ot the phaseHint attribute left empty. Automatic picks with a phaseHint other than "P" as well as any picks not tagged as automatic are currently ignored. It is thus highly recommended to always set the phaseHint attribute with the appropriate phase name. There is no restriction regarding the choice of the publicID of the pick.

Optionally scautoloc performance may be improved by processing certain amplitudes accompanying the picks. Two kinds of amplitudes may be used together

  • an absolute amplitude like the one used for calculation of the magnitude "mb"
  • relative amplitude like the dimension-less signal-to-noise ratio amplitude "snr"

Neither amplitude is used for magnitude computation by scautoloc. The default amplitude types used by scautoloc are of type "mb" and "snr". These defaults can be overridden in scautoloc.cfg:

autoloc.amplTypeSNR = snr
autoloc.amplTypeAbs = mb

If for instance an alternate picker implementation doesn't produce "mb"-type absolute amplitude but e.g. "xy", then autoloc.amplTypeAbs needs to be set to "xy" to have them recognized by scautoloc.

Currently there must be an absolute and a relative amplitude for every pick. However, this requirement will be relaxed in a future version. But currently scautoloc will always wait until both amplitude have arrived, which results in an overall processing delay, corresponding to the usually delayed availability of amplitudes with respect to the corresponding pick. The default absolute amplitude "mb", for instance, takes a hard-coded 30-seconds time interval to be computed. This length of data thus has to be waited for, plus a little extra because of the size of the MiniSEED records. An alternate picker implementation could produce a different absolute-amplitude type than "mb". That amplitude might be based on a different filter pass band and much shorter time window than the default "mb" amplitude, thus allowing a significantly improved processing speed. The choice of amplitude type and time window greatly depends on the network. For a regional or even global network the 30-seconds processing delay won't play a role, and we need the mb amplitude anyway. Here the delay of solutions produced by scautoloc is mostly controlled by the seismic traveltimes. Not so in case of a local or small-regional network, where the mb-type amplitude is of limited value and where a meaningful absolute amplitude might well be produced with just a second of data and at higher frequencies. Currently this isn't possible with scautopick but this issue will be addressed in a future version.

Configuration

etc/defaults/global.cfg
etc/defaults/scautoloc.cfg
etc/global.cfg
etc/scautoloc.cfg
~/.seiscomp3/global.cfg
~/.seiscomp3/scautoloc.cfg

scautoloc inherits global options.

autoloc.maxSGAP

Type: double

Max. secondary azimuth gap for an origin to be reported by. Default is 360 degrees, i.e. no restriction based on this parameter. Default is 360.

autoloc.thresholdXXL

Type: double

Arrivals with exceptionally large amplitudes may be flagged as XXL, allowing (in future) faster, preliminary "heads-up" alerts. Default is 10000.

autoloc.maxStationDistance

Type: double

Stations outside the maximum distance range are ignored. Default is 180.

autoloc.maxDistanceXXL

Type: double

XXL picks from stations beyond maxDistanceXXL are ignored. Default is 10.

autoloc.minPhaseCount

Type: integer

Minimum number of phases. Default is 6.

autoloc.minPhaseCountXXL

Type: integer

Minimum number of XXL phases. Default is 4.

autoloc.minStaCountIgnorePKP

Type: integer

If the station count for stations at < 105 degrees distance exceeds this number, no picks at > 105 degrees will be used in location. They will be loosely associated, though. Default is 30.

autoloc.cleanupInterval

Type: integer

Clean-up interval for removing old/unused objects. Default is 3600.

autoloc.maxAge

Type: integer

Max. age for objects kept in memory. Default is 21600.

autoloc.wakeupInterval

Type: integer

Don`t change. Default is 5.

autoloc.adoptManualDepth

Type: boolean

If set to true, autoloc adopts a depth from a manual origin. If false, autoloc may set a default depth (autoloc.defaultDepth). Default is true.

autoloc.amplTypeAbs

Type: string

If this string is non-empty, an amplitude obtained from an amplitude object is used by ... . If this string is "mb", a period obtained from the amplitude object is also used; if it has some other value, then 1 [units?] is used. If this string is empty, then the amplitude is set to 0.5 * thresholdXXL, and 1 [units?] is used for the period. Default is mb.

autoloc.amplTypeSNR

Type: string

If this string is non-empty, it is used to obtain a pick SNR from an amplitude object. If it is empty, the pick SNR is 10. Default is snr.

autoloc.publicationIntervalTimeSlope

Type: double

This is the parameter "a" in the equation Δt = aN + b for the time interval between origin updates.

autoloc.publicationIntervalTimeIntercept

Type: double

This is the parameter "b" in the above mentioned equation for the update interval Δt.

autoloc.grid

Type: string

Location of autoloc grid file. Default is @DATADIR@/scautoloc/grid.conf.

autoloc.stationConfig

Type: string

Location of autoloc stations config file. Default is @DATADIR@/scautoloc/station-locations.conf.

autoloc.pickLog

Type: string

Location of autoloc stations config file. Default is @LOGDIR@/autoloc-picklog.

Command-line

Generic

-h, --help

show help message.

-V, --version

show version information

--config-file arg

Use alternative configuration file. When this option is used the loading of all stages is disabled. Only the given configuration file is parsed and used. To use another name for the configuration create a symbolic link of the application or copy it, eg scautopick -> scautopick2.

--plugins arg

Load given plugins.

-D, --daemon

Run as daemon. This means the application will fork itself and doesn't need to be started with &.

--auto-shutdown arg

Enable/disable self-shutdown because a master module shutdown. This only works when messaging is enabled and the master module sends a shutdown message (enabled with --start-stop-msg for the master module).

--shutdown-master-module arg

Sets the name of the master-module used for auto-shutdown. This is the application name of the module actually started. If symlinks are used then it is the name of the symlinked application.

--shutdown-master-username arg

Sets the name of the master-username of the messaging used for auto-shutdown. If "shutdown-master-module" is given as well this parameter is ignored.

Verbosity

--verbosity arg

Verbosity level [0..4]. 0:quiet, 1:error, 2:warning, 3:info, 4:debug

-v, --v

Increase verbosity level (may be repeated, eg. -vv)

-q, --quiet

Quiet mode: no logging output

--component arg

Limits the logging to a certain component. This option can be given more than once.

-s, --syslog

Use syslog logging back end. The output usually goes to /var/lib/messages.

-l, --lockfile arg

Path to lock file.

--console arg

Send log output to stdout.

--debug

Debug mode: --verbosity=4 --console

--log-file arg

Use alternative log file.

Messaging

-u, --user arg

Overrides configuration parameter connection.username.

-H, --host arg

Overrides configuration parameter connection.server.

-t, --timeout arg

Overrides configuration parameter connection.timeout.

-g, --primary-group arg

Overrides configuration parameter connection.primaryGroup.

-S, --subscribe-group arg

A group to subscribe to. This option can be given more than once.

--encoding arg

Overrides configuration parameter connection.encoding.

--start-stop-msg arg

Sets sending of a start- and a stop message.

Database

--db-driver-list

List all supported database drivers.

-d, --database arg

The database connection string, format: service://user:pwd@host/database. "service" is the name of the database driver which can be queried with "--db-driver-list".

--config-module arg

The configmodule to use.

--inventory-db arg

Load the inventory database from a given XML file.

--db-disable

Do not use the database at all

Mode

--test

Do not send any object

--offline

Do not connect to a messaging server. Instead a station-locations.conf file can be provided. This implies --test and --playback

--playback

Flush origins immediately without delay

Settings

--station-locations arg

The station-locations.conf file to use when in offline mode. If no file is given the database is used.

--station-config arg

The station.conf file

--pick-log arg

The pick log file

--grid arg

The grid.conf file to use

--default-depth arg
--max-sgap arg
--max-rms arg
--max-residual arg
--max-station-distance arg

Maximum distance of stations to be used

--max-nucleation-distance-default arg

Default maximum distance of stations to be used for nucleating new origins

--min-pick-affinity arg
--min-phase-count arg

Minimum number of picks for an origin to be reported

--min-score arg

Minimum score for an origin to be reported

--min-pick-snr arg

Minimum SNR for a pick to be processed

--threshold-xxl arg

An amplitude exceeding this threshold will flag the pick as XXL

--min-phase-count-xxl arg

Minimum number of picks for an XXL origin to be reported

--max-distance-xxl arg
--min-sta-count-ignore-pkp arg

Minimum station count for which we ignore PKP phases

--min-score-bypass-nucleator arg

Minimum score at which the nucleator is bypassed

--keep-events-timespan arg

The timespan to keep historical events

--cleanup-interval arg

The object cleanup interval in seconds

--max-age arg

During cleanup all objects older than maxAge (in seconds) are removed (maxAge == 0 => disable cleanup)

--wakeup-interval arg

The interval in seconds to check pending operations

--dynamic-pick-threshold-interval arg

The interval in seconds in which to check for extraordinarily high pick activity, resulting in a dynamically increased pick threshold